Frenchman Michel Dussuyer resigned as Guinea coach following their quarter-final elimination by Ghana from the CAF Africa Cup of Nations in Equatorial Guinea.
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Guinea were outclassed 3-0 by Ghana in Sunday's quarter-final and had drawn all three of their group matches.
The 55-year-old had been in the job since 2010, and on Sunday had refused to even mull the question of stepping down.
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Guinea had made it through to the last eight after a drawing of lots was needed to separate them from Mali, with whom they shared the same points, goals scored and goal difference.